Cutting-edge technology The workbench incorporates cutting-edge technology and the newest state-of-the-art algorithms, while also supporting and integrating into the rest of a typical NGS workflow.
#CLC GENOMICS WORKBENCH MAP TO REFERENCE MAC OS#
It includes steps for demultiplexing, mapping and metadata handling, as well as downstream analysis options. CLC Genomics Workbench is a cross-platform desktop application and is compatible with Windows, Mac OS X, and Linux platforms. Understand management of reference dataģ. This tutorial uses the capabilities of CLC Genomics Workbench with the Biomedical Genomics Analysis plugin to analyse UPX 3 reads and assess quality. A quality score of Q30 and a minimum length of 100 bases was used to trim reads. Learn to work with reads from various platforms (Illumina, IonTorrent, Oxford Nanopore, Pacific Biosciences, BGI/MGI)Ģ. Compute infrastructure LIMS Genome assembly, demultiplexing + mapping Variant detection Tertiary analysis Data analysis services. Sequence data analysis All fastq files were processed using CLC Genomics Workbench version 9 (CLC Bio, Denmark).
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Learn about: Working with reads from various platforms (Illumina, IonTorrent, Oxford Nanopore, Pacific Biosciences, BGI/MGI) Tailored solutions for RNA-seq, DNA-seq and methylation Efficient algorithms for read trimming, mapping, de novo assembly and variant calling Effective management of reference data Scalable processing of many samples, with advanced workflow and reporting capabilities Easy installation on Windows, Mac and Linux.ġ. In this live webinar, Leif Schauser, Ph.D., Director Product Management Genome Analysis, will review a host of new features in the latest release of the QIAGEN CLC Genomics Workbench 20 that help you scale your research, and allow you to ramp up your productivity by taking your multi-sample analyses to the next level. Are Shiga toxin negative Escherichia coli O157. CLC Genomics Workbench was used to perform bioinformatics analysis and de novo contig assembly. Using metagenomics, the team built a genome-based ecological model of the microbial community that results from the partial-nitration anaerobic ammonium oxidation (PNA) treatment system. Researchers used CLC Genomics Workbench to map reads to a reference genome and to analyze differences between the two assemblies. Powered by cutting-edge technology and accelerated algorithms, it supports a comprehensive set of NGS data analysis applications. CLC Genomics Workbench was used for several purposes in a recent Nature report from a Netherlands-based team focused on the latest wastewater treatment methods. QIAGEN CLC Genomics Workbench is a powerful solution to analyze and visualize next generation sequencing (NGS) data.